将FASTA或GDE格式的对比序列文件拷贝到以下区域
>CremaneiFEM-2 -------------------MSDSLNHPSSSTVHADDGFEPPTSPEDNNKK PSLEQIKQEREALFTDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPN- -PHSIPIRFRHQPVAGPAHDVFGDAVHSIFQKIMSRGVNADYSHWMSYWI ALGIDKKT-QMNYHMKPFCKDTYATEGSLEAKQTFTDKIRSAVEEIIWKS AEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQYMNRGQ-SDIS LLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETLD ERMTVRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRK FTTEHSPSDPEECRRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPM ISNKPDTLLKTIEPADYLVLLACDGISDVFNTSDLYNLVQAFVNEYDVED YHELARYICNQAVSAGSADNVTVVIGFLRPPEDVWRVMKTDSDDEESELE EEDDNE >CelegansFEM-2 -------------------------------------------------- --MEKVNEERDAVFEDHIGDRRRSVRSLLEEAFADEMEKTSYDVEVADTP -QPHIPIRFRHPPIAGPVHDVFGDAIHDIFQKMMKRGQAVDFCHWVSHLI ATEIDEKFSEVAFRDVQYNPDIYVTDSTTEAKKLFNDKIWPAIDKILQQN AETCPILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRGE-DPIS VLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLD ERMTVRSVKECWKGGSTAVCCAIDMDQKLMALAWLGDSPGYVMSNIEFRQ LTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGRPM ISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVED YAELSRFICTKAIEAGSADNVSVVIGFLRPPQDVWKLMKHESDDEDSDVT DEE--- >CbriggsaeFEM-2 MSGPPPPKTNEKSSQPVTGRSQEPTRKGQLGPNYLRIIEEDEEYGHALLE PSEEQIKFEREALFEDLHLDRQRSARSFIEETFEEEMLGPQNGIPPTTES PQSYIPIRYRNPPAAAPVHDVFGDAVHAIFQKLMTRGPPVEYCHWMSYWI AKQIDKDS-PVKYHECRFTPDQYVTENTAEAKKTYMDNMWKAAEKNLWMY TYNSPLLRTKWTGIHVSAEQIKGQRHKQEDRFVAYPNSLYMDTSRSDHIA LLGVFDGHGGHECSQYAAGHMWETWIETRASHFEEP-LEKQLKTSLDLLD ERMTVRSTKECWKGGTTAVCCAIDMNKKELAFAWLGDSPGYIMDNLEVRK VTRDHSPSDPEEGRRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGRPM ISNQAETCQRDIEVGDYLVILACDGISDVFNTSDLYNLVQAYVNENPVEE YNDLAHYICHEAIAHGSTDNVTVVIGFLRPPQDLWRMMKIDEESDEEEDE VDDE--

• 每行显示 100 90 80 70 60 50 40 30 个残基
• 字体： Arial Arial Black Arial Narrow Courier New Times New Roman
• 字号： 8 10 12 14 18 24 36
• 使用 背景色 文字色 突出残基

选择希望使用的颜色同样的氨基酸具有上色的最高优先级，其后为类似性氨基酸。

• 同样的氨基酸上色为： by amino acid white very light gray light gray medium gray dark gray very dark gray black lightest red very light red light red medium red dark red very dark red darkest red lightest yellow very light yellow light yellow medium yellow dark yellow very dark yellow darkest yellow lighest blue very light blue light blue medium blue dark blue very dark blue darkest blue lighest green very light green light green medium green dark green very dark green darkest green 类似性氨基酸上色为： by amino acid white very light gray light gray medium gray dark gray very dark gray black lightest red very light red light red medium red dark red very dark red darkest red lightest yellow very light yellow light yellow medium yellow dark yellow very dark yellow darkest yellow lighest blue very light blue light blue medium blue dark blue very dark blue darkest blue lighest green very light green light green medium green dark green very dark green darkest green
• Percentage of sequences that must agree for identity or similarity coloring to be added: 10 20 30 40 50 60 70 80 90 100
• 缺省色(非相同氨基酸与类似性氨基酸): white very light gray light gray medium gray dark gray very dark gray black lightest red very light red light red medium red dark red very dark red darkest red lightest yellow very light yellow light yellow medium yellow dark yellow very dark yellow darkest yellow lighest blue very light blue light blue medium blue dark blue very dark blue darkest blue lighest green very light green light green medium green dark green very dark green darkest green
• 缺口颜色： white very light gray light gray medium gray dark gray very dark gray black lightest red very light red light red medium red dark red very dark red darkest red lightest yellow very light yellow light yellow medium yellow dark yellow very dark yellow darkest yellow lighest blue very light blue light blue medium blue dark blue very dark blue darkest blue lighest green very light green light green medium green dark green very dark green darkest green

输入所使用的类似性氨基酸组，以逗号分隔。
ILV,FWY,KRH,DE,GAS,P,C,TNQM

输入by amino acid选项所用的颜色表。 每种氨基酸定义为两种颜色，以空格分隔，每组颜色后以逗号分隔，最后一组没有逗号。每组中的第一个颜色，如果选择文字色选项时为文字文本色,如果选择背景色选项时为背景色 。第二个颜色当选择背景色选项时文字文本的颜色颜色数值以十六进制颜色码输入。
A=#999999 #000000, C=#FFFF00 #000000, D=#33CCFF #000000, E=#33CCFF #000000, F=#FF9900 #000000, G=#999999 #000000, H=#CC0000 #000000, I=#FF6666 #000000, K=#CC0000 #000000, L=#FF6666 #000000, M=#3366FF #000000, N=#3366FF #000000, P=#CC33CC #000000, Q=#3366FF #000000, R=#CC0000 #000000, S=#999999 #000000, T=#3366FF #000000, V=#FF6666 #000000, W=#FF9900 #000000, Y=#FF9900 #000000

输入序列对比的起始位置。以逗号分隔。以下是一个例子： 3,200,5,1。如果不输入数值，每条序列的缺省起始位置为0。